RNA expression in brain cell types
Gene symbol:
Data source:
Darmanis Single Cell Human
Zhang Immunopanning Mouse
Zhang Immunopanning Human
Tasic Single Cell V1 Mouse
Zeisel Single Cell Mouse
Log2 transform?
Sub-cell types?
Exon level?
Exon range:
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References:
Zhang Y, et al. J Neurosci 2014; doi:10.1523/JNEUROSCI.1860-14.2014
Darmanis S, et al. PNAS 2015; doi:10.1073/pnas.1507125112
Zhang Y, et al. Neuron 2016; doi:10.1016/j.neuron.2015.11.013
Tasic B, et al. Nat Neurosci 2016; doi:10.1038/nn.4216
Zeisel A, et al. Science 2015; doi:10.1126/science.aaa1934
Notes:
- Error bars represent the standard error of the mean.
- RNA expression data has been quantile normalized for all data sets.
- Data is mapped to the GENCODE GRCh38.p2 or UCSC mm10 data sets for the human and mouse data, respectively.
- Where possible, we have converted from mouse to human symbols for all data sets.
- Exons are numbered by their relative position in the genome.
- To find the exon genome coordinates, please use the download button.
- Data is averaged across regions for some cell types in Zeisel et al.